volSurfaceRegularization.cpp

 
#include <DGtal/base/Common.h>
#include <DGtal/helpers/StdDefs.h>
 
#include "CLI11.hpp"
 
#include <DGtal/images/ImageSelector.h>
#include <DGtal/io/readers/GenericReader.h>
#include <DGtal/topology/SurfelNeighborhood.h>
#include <DGtal/topology/helpers/Surfaces.h>
#include <DGtal/geometry/volumes/distance/VoronoiMap.h>
#include <random>
#include <iomanip>
#include <regex>
#include "volSurfaceRegularization-details/surface_approx.h"
#include "volSurfaceRegularization-details/surface_extract.h"
#include "volSurfaceRegularization-details/shape.h"
 
 
struct Options
{
  double noise_level {0};
  std::string image_filename;
  double normal_radius {4} ;
  double regularization_position {1e-3};
  double regularization_center {1e-2};
  double align {1.0};
  double fairness{0.0};
  double barycenter{1e-1};
  std::string regularized_obj_filename;
  std::string cubical_obj_filename;
};
 
 
 
  
 
 
int main(int argc, char* argv[])
{
  using DGtal::trace;
  using std::endl;
  using DGtal::PRIMAL;
  using DGtal::DUAL;
  
  // parse command line using CLI ----------------------------------------------
  CLI::App app;
  Options options;
  
  app.description("Regularize a cubical complex into a smooth quadrangulated complex.");
  
  app.add_option("--image-filename,-i,1",options.image_filename, "input vol filename for image shape (object voxels have values > 0) or input cvs filename for surfels and normals") -> required();
  app.add_option("--regularized-obj-filename,-o,1", options.regularized_obj_filename, "output regularized obj") -> required();
  app.add_option("--cubical-obj-filename,-n", options.cubical_obj_filename, "output cubical obj");
  app.add_option("--shape-noise,-k", options.noise_level,"noise shape parameter" );
  auto groupNormEst = app.add_option_group("Normal field estimator options");
  groupNormEst->add_option("--normal-radius,-r", options.normal_radius, "radius of normal estimator");
 
  auto groupApprox = app.add_option_group("Surface approximation options");
  groupApprox->add_option("--regularization-position,-p", options.regularization_position, "vertex position regularization coeff" );
  groupApprox->add_option("--regularization-center,-c",options.regularization_center, "face center regularization coeff");
  groupApprox->add_option("--align,-a", options.align, "normal alignment coeff");
  groupApprox->add_option("--fairness,-f",options.fairness,"face fairness coeff");
  groupApprox->add_option("--barycenter,-b", options.barycenter, "barycenter fairness coeff");
 
  app.get_formatter()->column_width(40);
  CLI11_PARSE(app, argc, argv);
  // END parse command line using CLI ----------------------------------------------
 
    const KSpace kspace;
 
    const Calculus calculus;
    const FlatVector original_face_normals;
 
    if (!ends_with(options.image_filename, ".csv"))
    {
        ASSERT( !options.image_filename.empty() );
        typedef DGtal::Z3i::Domain Domain;
        typedef DGtal::ImageSelector<Domain, unsigned char>::Type ImageUChar;
        trace.info() << "image_filename=" << options.image_filename << endl;
        ImageUChar image_uchar = DGtal::GenericReader<ImageUChar>::import(options.image_filename);
        const Domain domain = image_uchar.domain();
        trace.info() << "domain=" << domain << endl;
        const Point center = (domain.upperBound()+domain.lowerBound())/2;
        trace.info() << "center=" << center << endl;
        const ImageShape<ImageUChar> shape(&image_uchar, center);
 
        const_cast<KSpace&>(kspace).init(domain.lowerBound()-center-Point::diagonal(1), domain.upperBound()-center+Point::diagonal(1), true);
 
        std::tie(const_cast<Calculus&>(calculus), const_cast<FlatVector&>(original_face_normals)) =
            initCalculusAndNormalsWithNoise(kspace, shape, options.normal_radius, options.noise_level);
    }
 
    if (ends_with(options.image_filename, ".csv"))
    {
        ASSERT( !options.image_filename.empty() );
        trace.info() << "csv_filename=" << options.image_filename << endl;
        std::tie(const_cast<Calculus&>(calculus), const_cast<FlatVector&>(original_face_normals)) =
            initCalculusAndNormalsFromSurfelNormalsCSV(options.image_filename);
    }
 
    const FlatVector original_vertex_normals = vertexNormals(calculus, original_face_normals);
 
    const FlatVector original_positions;
    const FlatVector regularized_positions;
    const FlatVector original_centers;
    const FlatVector regularized_centers;
    std::tie(const_cast<FlatVector&>(original_positions),
             const_cast<FlatVector&>(regularized_positions),
             const_cast<FlatVector&>(original_centers),
             const_cast<FlatVector&>(regularized_centers)) =
             approximateSurface(calculus, original_face_normals,
             ApproxParams({options.regularization_position, options.regularization_center, options.align, options.fairness, options.barycenter}));
    ASSERT( original_positions.size() == 3*calculus.kFormLength(0, PRIMAL) );
    ASSERT( regularized_positions.size() == 3*calculus.kFormLength(0, PRIMAL) );
    ASSERT( original_centers.size() == 3*calculus.kFormLength(2, PRIMAL) );
    ASSERT( regularized_centers.size() == 3*calculus.kFormLength(2, PRIMAL) );
 
    {
      trace.beginBlock( "computing energies" );
 
      {
        double position_energy = 0;
        double align_energy    = 0;
        std::tie( position_energy, align_energy ) = approximateSurfaceEnergies(
        calculus, original_face_normals, original_positions );
        align_energy *= options.align;
        position_energy *= options.regularization_position;
        trace.info() << "original_energies=" << position_energy << " "
                     << align_energy << " " << position_energy + align_energy
                     << endl;
        }
 
        {
            double position_energy = 0;
            double align_energy = 0;
            std::tie(position_energy, align_energy) = approximateSurfaceEnergies(calculus, original_face_normals, regularized_positions);
            align_energy *= options.align;
            position_energy *= options.regularization_position;
            trace.info() << "regularized_energies=" << position_energy << " " << align_energy << " " << position_energy+align_energy << endl;
        }
 
        trace.endBlock();
    }
 
    {
        ASSERT( !options.regularized_obj_filename.empty() );
        trace.info() << "regularized_obj_filename=" << options.regularized_obj_filename << endl;
        exportOBJ(calculus, regularized_positions, options.regularized_obj_filename);
    }
 
    if (!options.cubical_obj_filename.empty())
    {
        ASSERT( !options.cubical_obj_filename.empty() );
        trace.info() << "cubical_obj_filename=" << options.cubical_obj_filename << endl;
        exportOBJ(calculus, original_positions, options.cubical_obj_filename);
    }
 
    return 0;
}