3DCurvatureViewerNoise

Same as 3DCurvatureViewer, but allows to add some noise to objects.

Vol file viewer, with curvature (mean or Gaussian, see parameters) information on surface. Blue color means lowest curvature Yellow color means highest curvature Red means the in-between

Uses IntegralInvariantCurvatureEstimation

See also

related article: Coeurjolly, D.; Lachaud, J.O; Levallois, J., (2013). Integral based Curvature Estimators in Digital Geometry. DGCI 2013. Retrieved from https://liris.cnrs.fr/publis/?id=5866

Usage: 3dCurvatureViewerNoise -i file.vol –radius 5 –mode mean –noise 0.5

Allowed options are:

Positionals:
  1 TEXT:FILE REQUIRED                  vol file (.vol, .longvol .p3d, .pgm3d and if WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255.
 
Options:
  -h,--help                             Print this help message and exit
  -i,--input TEXT:FILE REQUIRED         vol file (.vol, .longvol .p3d, .pgm3d and if WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255.
  -r,--radius FLOAT REQUIRED            Kernel radius for IntegralInvariant
  -k,--noise FLOAT=0.5                  Level of Kanungo noise ]0;1[
  -t,--threshold UINT=8                 Min size of SCell boundary of an object
  -l,--minImageThreshold INT=0          set the minimal image threshold to define the image object (object defined by the voxel with intensity belonging to ]minImageThreshold, maxImageThreshold ] ).
  -u,--maxImageThreshold INT=255        set the maximal image threshold to define the image object (object defined by the voxel with intensity belonging to ]minImageThreshold, maxImageThreshold] ).
  -m,--mode TEXT:{mean,gaussian,k1,k2,prindir1,prindir2,normal}=mean
                                        type of output : mean, gaussian, k1, k2, prindir1, prindir2 or normal(default mean)
  -o,--exportOBJ TEXT                   Export the scene to specified OBJ/MTL filename (extensions added).
  -d,--exportDAT TEXT                   Export resulting curvature (for mean, gaussian, k1 or k2 mode) in a simple data file each line representing a surfel.
  --exportOnly                          Used to only export the result without the 3d Visualisation (usefull for scripts).
  -s,--imageScale FLOAT x 3             scaleX, scaleY, scaleZ: re sample the source image according with a grid of size 1.0/scale (usefull to compute curvature on image defined on anisotropic grid). Set by default to 1.0 for the three axis.
  -n,--normalization BOOLEAN            When exporting to OBJ, performs a normalization so that the geometry fits in [-1/2,1/2]^3

Below are the different available modes:

    - "mean" for the mean curvature
    - "gaussian" for the Gaussian curvature
    - "k1" for the first principal curvature
    - "k2" for the second principal curvature
    - "prindir1" for the first principal curvature direction
    - "prindir2" for the second principal curvature direction
    - "normal" for the normal vector

Example:

$ 3dCurvatureViewerNoise $DGtal/examples/samples/Al.100.vol -r 15 -m mean -k 0.5

You should obtain such a visualisation:

resulting visualisation of mean curvature.

See also

3dCurvatureViewerNoise.cpp, 3DCurvatureViewer