doctools-nightly/vol2slice.html

 Typical use: to extract all slices defined in Y plane (y=cst):

 vol2slice -i image3d.vol -s 1  -o slice.pgm


Usage: ./converters/vol2slice [OPTIONS] 1 [2]


Positionals:

  1 TEXT:FILE REQUIRED                  vol file (.vol, .longvol .p3d, .pgm3d and if WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha                                         or mhd formats, the input values are linearly scaled between 0 and 255.

  2 TEXT=result.pgm                     base_name.extension:  extracted 2D slice volumetric files (will result n files base_name_xxx.extension)


Options:

  -h,--help                             Print this help message and exit

  -i,--input TEXT:FILE REQUIRED         vol file (.vol, .longvol .p3d, .pgm3d and if WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha                                         or mhd formats, the input values are linearly scaled between 0 and 255.

  -o,--output TEXT=result.pgm           base_name.extension:  extracted 2D slice volumetric files (will result n files base_name_xxx.extension)

  -f,--setFirstSlice INT:NUMBER=0       Set the first slice index to be extracted.

  -l,--setLastSlice INT:NUMBER          Set the last slice index to be extracted (by default set to maximal value according to the given volume).

  -s,--sliceOrientation UINT:{0,1,2}=2  specify the slice orientation for which the slice are defined (by default =2 (Z direction))

  --rescaleInputMin INT=0               min value used to rescale the input intensity (to avoid basic cast into 8  bits image).

  --rescaleInputMax INT=255             max value used to rescale the input intensity (to avoid basic cast into 8  bits image).