volMask

Extracts a new image from the a mask image that represents the regions of the image which are selected and copied in the resulting image. Elements outside the regions defined by the mask are set to 0.

Usage: volMask [input]

Allowed options are :

Positionals:
  1 TEXT:FILE REQUIRED                  an input 3D image vol (or ITK: .nii, mha, ... ) file.
  2 TEXT=result.vol                     the output masked image.
 
Options:
  -h,--help                             Print this help message and exit
  -i,--input TEXT:FILE REQUIRED         an input 3D image vol (or ITK: .nii, mha, ... ) file.
  -t,--inputType TEXT                   to specify the input image type (int or double).
  -a,--mask TEXT:FILE                   the mask image that represents the elements that are copied as output in the resulting image (by default set to 1 you can change this value by using --maskValue).
  -o,--output TEXT=result.vol           the output masked image.
  -f,--offsetBorder UINT=0              add a border offset to the bounding box of the masked value domain.
  -m,--maskValue INT=1                  the masking value.

Example:

volMask  ${DGtal}/examples/samples/lobster.vol lobsMasked.vol  -a ${DGtal}/examples/samples/lobster.vol   -m 100

Example of result.

See also

volMask.cpp